For 20 years, researchers have tried to find out why the chaperone Ssb is the only member of the widespread Hsp70-chaperone family that is able to bind directly to the ribosome. This question has now been answered at the University of Konstanz. Through the collaboration of the teams of Professor Elke Deuerling and Professor Christine Peter within the Collaborative Research Centre SFB 969 "Chemical and Biological Principles of Cellular Proteostasis" and the Research School Chemical Biology, the researchers were able to identify two regions within the Ssb chaperone that mediate direct contact to the ribosome and thus support the function of Ssb. "We can demonstrate that Ssb interacts with the ribosome mainly via positively charged amino acids", says Professor Elke Deuerling, speaker of the SFB 969, in whose team the binding sites of Ssb were discovered. The results were published on 5 December 2016 in the renowned scientific journal Nature Communications.
The chaperone Ssb is a member of the evolutionarily highly conserved Hsp70 chaperone family which is found in all living organisms. Hsp70 chaperones play a central role for correct protein folding – a process in which a protein adopts the right structure –, for preventing abnormal folding as well as for the transport of proteins. Ssb is the only family member that is in direct contact with the ribosome. It is active at a very early stage, when new proteins are being synthesised in the ribosome. "This ability is unique and cannot be detected at first glance when comparing Ssb with other Hsp70 chaperones. Only a few amino acids provide Ssb with this additional feature and show how flexible Hsp70 chaperones can be", explains molecular biologist Elke Deuerling, whose team member Dr. Anne Hanebuth significantly contributed to the discovery of the Ssb attachment sites in her doctoral thesis.
In several experiments, the biologists found out that the Ssb attachment sites are not essential under normal (lab-) conditions. If they are mutated, primarily nothing changes for the yeast cells. However, this is no longer the case if the co-chaperone RAC, another ribosome-bound complex that supports the function of Ssb, is absent. Without RAC, abnormal protein folding occurs in Ssb mutant cells, resulting in pronounced cellular defects. "We believe that these multivalent interactions with direct attachment sites and the cooperation with RAC allow the chaperone Ssb to position itself at the ribosome in an optimal way", says Elke Deuerling. Finding this exact position at the ribosome is of crucial importance for the effectiveness of the chaperone.
The ribosome-bound chaperone Ssb can only be found, in contrast to the co-chaperone RAC, in fungi such as yeast. In higher cells, RAC probably cooperates with other Hsp70 chaperones. This is why the researchers assume that the RAC-Hsp70-chaperone system is generally very important for correct folding of proteins and for keeping the cells fit. "How the RAC-Hsp70 system operates in higher cells and which effects it has on proteins relevant for diseases, will be a huge topic in the SFB", says Elke Deuerling. She further comments on the Ssb-chaperone results: "It was great team work within the University of Konstanz and with renowned teams from Heidelberg and Stanford. Computer simulations of the molecular dynamics of Ssb provided important indications of molecular interactions within the Ssb protein. This led to hypotheses about the ribosome interaction, which we have studied using further genetic, biochemical and kinetic approaches. So, step by step, we were able to achieve our results."
Marie A. Hanebuth, Roman Kityk, Sandra J. Fries, Alok Jain, Allison Kriel, Veronique Albanese, Tancred Frickey, Christine Peter, Matthias P. Mayer, Judith Frydman, Elke Deuerling: Multivalent contacts of the Hsp70 Ssb contribute to its architecture on ribosomes and nascent chain interaction. In: Nature Communications on 05 December 2016
- Researchers involved: The Konstanz biologists Professor Elke Deuerling and her colleagues Dr. Marie Anne Hanebuth and Sandra J. Fries; the Konstanz chemists Professor Christine Peter and her colleague Dr. Alok Jain; bioinformatician Professor Tancred Frickey; biologist and visiting professor Judith Frydman, Stanford University, USA and her team; biologist Professor Matthias P. Mayer, University of Heidelberg and his team.
- The collaborative research centre SFB 969 has been funded since 2012. The funding period has been extended until the end of 2019.
- Funding sum: around 18 million euros until 2019.
- Contents: Using the regulatory network of proteostasis to study chemical and biological processes that control cellular protein activities.
- Departments involved: Biology and Chemistry.